Servers for Sequence Alignment and Comparative Modelling

BlastProfiler Sequence alignment profile generator.
ModLoop Modeling loops in protein structures.
Loop decoy sets 500-500 8 and 12 residue long, optimized loops for 40 proteins.
MMM server Multiple Mapping Method: a sequence-to-structure alignment tool.
M4T server Comparative Modelling using a combination of multiple templates and interative optimization of alternative alignments.
MMMTree server Comparative Modelling using an iterative sequence to structure alignmnet approach.
ArchPred server A template based loop structure prediction server.

Servers for Sequence Analysis

Cysredox Predicting oxidation states of Cys residues from sequences of proteins.

Servers for Structure Analysis

Autopublish Internal access for AECOM users