MMM Server
Multiple Mapping Method: a novel approach to the sequence-to-structure alignment problem in comparative protein structure modeling. Brajesh K. Rai and Andras Fiser, Proteins (2006) 63(3):644-61
Template Structure and Target Sequence
  
 
Enter Template Structure
  
  PDB code  Chain ID   
(Type '-' if no chain is specified in your coordinate file)
 
  Or upload your coordinate file  Chain ID 
(Type '-' if no chain is specified in your coordinate file)
  
Enter Target Sequence
  
     
  Paste your sequence here (raw sequence ONLY)  
   
  OR upload a text file:  
     
Choose at least 2 alignment methods:  
     
  ClustalW  
  Align2D  
  ClustalW (with modified gap penalty)  
  Muscle  
  T-Coffee  
  HHAlign best alignment  
  HHAlign alternative alignment if available  
     
Optional alignments
  
  Add alignment Remove alignment  
  ...  
Output Format
  
         
  Get MMM alignment Get model    
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