Downloadable programs and data from publications
TF2DNA | Structure-based determination of transcription factor binding sites TF2DNA installation program |
RF_HA_SRS RF_CB_SRS_OD | Statistical pair potentials |
SmotifCOMP program | SmotifCOMP program (293M) |
Smotif database | Smotif Database (MySQL, compressed, 428Mb!) Readme |
SmotifCOMPSuperfamilyNetwork.txt | SmotifCOMP-based SCOP Superfamily network Readme |
SmotifCS | SMOTIFCS implement a hybrid protein modeling algorithms that relies on a library of protein super-secondary structure motifs (Smotifs) and easily obtainable NMR experimental data. |
remodel_pdb | Software for remodeling the missing residues in the entire PDB, these remodeled structures can be used in the SmotifTF package. |
SAMMI | MI-score calculates the average mutual information score for a given multipe sequence alignment. |
nr90 | NCBI non-redundant database of proteins clusted at 90%. |