PROCHECK-NMR parameters

Which plots to produce

There are 21 parameters defining which plots are required, one for each of the 21 plots:-

a. Geometry plots
   --------------
Y     <-  1. Ramachandran plot (Y/N)?
Y     <-  2. Gly & Pro Ramachandran plots (Y/N)?
N     <-  3. Chi1-Chi2 plots (Y/N)?
N     <-  4. Residue Phi torsion angle plots (Y/N)?
N     <-  5. Residue Psi torsion angle plots (Y/N)?
Y     <-  6. Residue Chi-1 plots (Y/N)?
Y     <-  7. Residue Chi-2 plots (Y/N)?
Y     <-  8. Residue Ramachandran plots (Y/N)?
N     <-  9. Residue chi1-chi2 plots (Y/N)?
Y     <-  10. Ensemble geometry (Y/N)?
Y     <-  11. Equivalent resolution (Y/N)?
Y     <-  12. Model-by-model secondary structures (Y/N)?

b. Restraint analyses
   ------------------
Y     <-  13. Distance restraints plot (Y/N)?
Y     <-  14. Restraint differences plot (Y/N)?
Y     <-  15. Numbers of distance restraints (Y/N)?
Y     <-  16. Actual distance - restraint summary (Y/N)?
Y     <-  17. Violation frequency summary (Y/N)?
Y     <-  18. Restraint statistics (Y/N)?
N     <-  19. Restraint spans (Y/N)?
Y     <-  20. Residue-by-residue restraint violations (Y/N)?
Y     <-  21. Model-by-model violations (Y/N)?

Description:-

Each of the 21 plots can be individually switched on or off by entering Y or N next to that plot, as required.

Note that the default setting for some of the less commonly-used plots is N.